{"id":15507,"date":"2024-08-27T17:19:55","date_gmt":"2024-08-27T15:19:55","guid":{"rendered":"https:\/\/www.egce.universite-paris-saclay.fr\/?p=15507"},"modified":"2025-07-09T18:02:45","modified_gmt":"2025-07-09T16:02:45","slug":"antoine-branca","status":"publish","type":"post","link":"https:\/\/www.egce.universite-paris-saclay.fr\/?p=15507","title":{"rendered":"Antoine, Branca"},"content":{"rendered":"\n
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Maitre de conf\u00e9rences \/ Associate professor <\/em> <\/p>\n\n\n\n

HDR<\/p>\n\n\n\n

Institut Diversit\u00e9 Ecologie et Evolution du Vivant (IDEEV)
Laboratoire Evolution, G\u00e9nomes Comportement, Ecologie<\/p>\n\n\n\n

CNRS\/Universit\u00e9 Paris-Saclay UMR 9191, IRD UMR 247
Bureau 1332,  1er Etage
12 route 128
91190 Gif sur Yvette
France
Tel: +33 (0)1 69 15 49 76<\/p>\n\n\n\n

Mail : <\/em>antoine.branca[at]universite-paris-saclay.fr<\/a> <\/em><\/p>\n\n\n\n

Complete list of publications : Google Scholar Profile<\/a><\/p>\n\n\n\n

ORCID 0000-0001-8475-1386<\/a><\/p>\n\n\n\n


Mots-cl\u00e9 \/ Keywords<\/p>\n\n\n\n

\u2022 Co\u00e9volution H\u00f4te-Parasite \/ Host-parasite coevolution\n\u2022 G\u00e9nomique des populations \/ Population genomics\n\u2022 G\u00e9nomique comparative \/ Comparative genomics\n\u2022 \u00c9cologie evolutive \/ Evolutionary Ecology<\/code><\/pre>\n\n\n\n

Main topic<\/p>\n\n\n\n
Gall wasps are insects capable of inducing structures called galls providing shelter against antagonists and varying climatic conditions, as well as food for their progeny, thereby increasing their survival. They do it by manipulating their host plant gene. The genetic basis of the ability to induce or form galls, on different plant species and organs, remains largely unknown and poorly studied. I used a mix of evolutionary approach to tackle this problem : population genomics,  phylogenomics and transcriptomics.  <\/p>\n\n\n\n
Associated funding : ANR JCJC BETAGALL 2020-2024 Principal Investigator<\/p>\n\n\n\n
Former\/side topics<\/p>\n\n\n\n
Cheese is a fermented food product that is the result of the transformation of milk by a
variety of microorganisms. Two Penicillium fungi are used for the maturation of cheese :
 * Penicillium roqueforti<\/em>, the blue mould, used for producing blue cheese
* Penicillium camemberti<\/em>, the white mold, used for the production of Camembert-type
cheese.
We use comparative genomics to understand the genetic basis of parallel adaptation of these two species to cheese.
We also use population genomics to unravel the history of domestication of Penicillium roqueforti<\/em>.<\/p>\n\n\n\n
Associated funding : ANR RetourPostDoc 2012, ANR FUNGADAPT, ANRT-CIFRE Funding
For media coverage see :
New-York Times https:\/\/tinyurl.com\/nhy4t8n<\/p>\n\n\n\n
Le Monde (in french) https:\/\/tinyurl.com\/noa6p3e
France Inter (Radio interview in french) https:\/\/tinyurl.com\/q8ly79y<\/p>\n\n\n\n
Since May 2023<\/h2>\n\n\n\n
Lecturer at Laboraty EGCE, Evolution and Genomes<\/p>\n\n\n\n
Sep. 2012 – Apr. 2022 <\/h2>\n\n\n\n
Lecturer at Laboratory ESE \/ IDEEV, Team GEE<\/p>\n\n\n\n
Oct. 2010 \u2013 Aug. 2012<\/h2>\n\n\n\n
Post Doc at the Institute for Evolution and Biodiversity, in M\u00fcnster, Germany in Evolutionary Bioinformatics Group, Prof. Erich Bornberg-Bauer; Research Scientist of the DFG-SPP \u201cHost Parasite Coevolution\u201dTopic: Population genomics of Bacillus thuringiensis\/ Caenorhabditis elegans host-parasite experimental coevolution<\/p>\n\n\n\n
Jun. 2009 \u2013 Aug. 2010<\/h2>\n\n\n\n
Post Doc at the University of Minnesota, Department of Plant Biology in Saint-Paul in the group of Dr. Peter Tiffin Topic: Analysis of the pattern of diversity of Medicago truncatula<\/em> and his associated Sinorhizobium<\/em> symbionts<\/p>\n\n\n\n
Feb. 2009<\/h2>\n\n\n\n
PhD degree at the Universit\u00e9 Pierre et Marie Curie in Paris Topic: Ecological diversification of the African parasitoid Cotesia sesamiae: Role of symbiotic partners <\/p>\n\n\n\n
Sep. 2005 \u2013 Feb. 2009<\/h2>\n\n\n\n
PhD studies under the supervision of Dr. St\u00e9phane Dupas at the Laboratory Evolution, Genome and Speciation in Gif-sur-Yvette<\/p>\n\n\n
\n\n\t\t5105424<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\tbranca<\/span>\n\t\t<\/span>\n        <\/span>\n\t\t1<\/span>\n\t\thttps:\/\/gitlab.com\/abranca\/tp-gevo\/-\/raw\/master\/apa.csl<\/span>\n\t\t50<\/span>\n\t\tdate<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\t<\/span>\n\t\ttitle<\/span>\n\t\t<\/span>\n        Branca, A.<\/span>\n        15507<\/span>\n\t\thttps:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/plugins\/zotpress\/<\/span>\n\n\t\t
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Caron, T., Crequer, E., Piver, M. L., Prieur, S. L., Brunel, S., Snirc, A., Cueff, G., Roueyre, D., Place, M., Chassard, C., Simon, A., Vega, R. C. R. de la, Coton, M., Coton, E., Foulongne-Oriol, M., Branca, A.<\/strong>, & Giraud, T. (2025). Identification of quantitative trait loci (QTLs) for key cheese making phenotypes in the blue-cheese mold Penicillium roqueforti<\/a>. PLOS Genetics<\/i>, 21<\/i>(4), e1011669\\n https:\/\/doi.org\/10.1371\/journal.pgen.1011669<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Hearn, J., Gobbo, E., Nieves-Aldrey, J. L., Branca, A.<\/strong>, Nicholls, J. A., Koutsovoulos, G., Lartillot, N., Stone, G. N., & Ronquist, F. (2024). Phylogenomic analysis of protein-coding genes resolves complex gall wasp relationships<\/a>. Systematic Entomology<\/i>, 49<\/i>(1), 110\u2013137\\n https:\/\/doi.org\/10.1111\/syen.12611<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Hulot, F. D., Moyon, M., Barthes, L., Bazot, S., Bonnaud, E., Branca, A.<\/strong>, Delpierre, N., Lecomte, J., & Allaire-Duquette, G. (2023, June). Comment les personnes enseignantes-chercheuses per\u00e7oivent-elles l'\u00e9volution de leurs connaissances en p\u00e9dagogie apr\u00e8s l'implantation d'une approche-programme ?<\/a><\/i> Universit\u00e9 de Lausanne (UNIL), Suisse\\n <\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Mozhaitseva, K., Tourrain, Z., & Branca, A.<\/strong> (2023). Population genomics of the mostly thelytokous Diplolepis rosae (Linnaeus, 1758)(Hymenoptera: Cynipidae) reveals population-specific selection for sex. bioRxiv<\/i>, 2023\u201301\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Crequer, E., Ropars, J., Jany, J.-L., Caron, T., Coton, M., Snirc, A., Vernadet, J.-P., Branca, A.<\/strong>, Giraud, T., & Coton, E. (2023). A new cheese population in Penicillium roqueforti and adaptation of the five populations to their ecological niche. Evolutionary Applications<\/i>\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Scharsack, J. P., Wieczorek, B., Schmidt-Drewello, A., B\u00fcscher, J., Franke, F., Moore, A., Branca, A.<\/strong>, Witten, A., Stoll, M., Bornberg-Bauer, E., & others. (2021). Climate change facilitates a parasite\u2019s host exploitation via temperature-mediated immunometabolic processes. Global Change Biology<\/i>, 27<\/i>(1), 94\u2013107\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, Le Ru, B., Calatayud, P.-A., Obonyo, J., Musyoka, B., Capdevielle-Dulac, C., Kaiser-Arnauld, L., Silvain, J.-F., Gauthier, J., Paillusson, C., & others. (2019). Relative influence of host, Wolbachia, geography and climate on the genetic structure of the Sub-Saharan parasitic wasp Cotesia sesamiae. Frontiers in Ecology and Evolution<\/i>, 7<\/i>, 309\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Fortuna, T. M., Namias, A., Snirc, A., Branca, A.<\/strong>, Hood, M. E., Raquin, C., Shykoff, J. A., & Giraud, T. (2018). Multiple infections, relatedness and virulence in the anther-smut fungus castrating Saponaria plants<\/a>. Molecular Ecology<\/i>, 27<\/i>(23), 4947\u20134959\\n https:\/\/doi.org\/doi.org\/10.1111\/mec.14911<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Kaiser, L., Dupas, S., Branca, A.<\/strong>, Herniou, E., Clarke, C., Capdevielle Dulac, C., Obonyo, J., Benoist, R., Gauthier, J., Calatayud, P.-A., & others. (2017). The Cotesia sesamiae story: insight into host-range evolution in a Hymenoptera parasitoid and implication for its use in biological control programs. Genetica<\/i>, 145<\/i>, 455\u2013468\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Badouin, H., Gladieux, P., Gouzy, J., Siguenza, S., Aguileta, G., Snirc, A., Le Prieur, S., Jeziorski, C., Branca, A.<\/strong>, & Giraud, T. (2017). Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Molecular Ecology<\/i>, 26<\/i>(7), 2041\u20132062\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Greenwood, J. M., Ezquerra, A. L., Behrens, S., Branca, A.<\/strong>, & Mallet, L. (2016). Current analysis of host\u2013parasite interactions with a focus on next generation sequencing data. Zoology<\/i>, 119<\/i>(4), 298\u2013306\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Ropars, J., de La Vega, R. R., L\u00f3pez-Villavicencio, M., Gouzy, J., Dupont, J., Swennen, D., Dumas, E., Giraud, T., & Branca, A.<\/strong> (2016). Diversity and mechanisms of genomic adaptation in Penicillium<\/i>. Caister Academic Press\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Ropars, J., de la Vega, R. C. R., L\u00f3pez-Villavicencio, M., Gouzy, J., Sallet, E., Dumas, \u00c9., Lacoste, S., Debuchy, R., Dupont, J., Branca, A.<\/strong>, & others. (2015). Adaptive horizontal gene transfers between multiple cheese-associated fungi. Current Biology<\/i>, 25<\/i>(19), 2562\u20132569\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Gillot, G., Jany, J.-L., Coton, M., Le Floch, G., Debaets, S., Ropars, J., Lopez-Villavicencio, M., Dupont, J., Branca, A.<\/strong>, Giraud, T., & others. (2015). Insights into Penicillium roqueforti morphological and genetic diversity. PLoS One<\/i>, 10<\/i>(6), e0129849\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Badouin, H., Hood, M. E., Gouzy, J., Aguileta, G., Siguenza, S., Perlin, M. H., Cuomo, C. A., Fairhead, C., Branca, A.<\/strong>, & Giraud, T. (2015). Chaos of rearrangements in the mating-type chromosomes of the anther-smut fungus Microbotryum lychnidis-dioicae. Genetics<\/i>, 200<\/i>(4), 1275\u20131284\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Kaiser, L., Le Ru, B. P., Kaoula, F., Paillusson, C., Capdevielle-Dulac, C., Obonyo, J. O., Herniou, E. A., Jancek, S., Branca, A.<\/strong>, Calatayud, P.-A., & others. (2015). Ongoing ecological speciation in Cotesia sesamiae, a biological control agent of cereal stem borers. Evolutionary Applications<\/i>, 8<\/i>(8), 807\u2013820\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Masri, L., Branca, A.<\/strong>, Sheppard, A. E., Papkou, A., Laehnemann, D., Guenther, P. S., Prahl, S., Saebelfeld, M., Hollensteiner, J., Liesegang, H., & others. (2015). Host\u2013Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes. PLoS Biology<\/i>, 13<\/i>(6)\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Leforestier, D., Ravon, E., Muranty, H., Cornille, A., Lemaire, C., Giraud, T., Durel, C.-E., & Branca, A.<\/strong> (2015). Genomic basis of the differences between cider and dessert apple varieties. Evolutionary Applications<\/i>, 8<\/i>(7), 650\u2013661\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Cheeseman, K., Ropars, J., Renault, P., Dupont, J., Gouzy, J., Branca, A.<\/strong>, Abraham, A.-L., Ceppi, M., Conseiller, E., Debuchy, R., & others. (2014). Multiple recent horizontal transfers of a large genomic region in cheese making fungi. Nature Communications<\/i>, 5<\/i>(2876), 1\u20139\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Gladieux, P., Ropars, J., Badouin, H., Branca, A.<\/strong>, Aguileta, G., De Vienne, D. M., Rodr\u00edguez De La Vega, R. C., Branco, S., & Giraud, T. (2014). Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes. Molecular Ecology<\/i>, 23<\/i>(4), 753\u2013773\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Dupas, S., Le Ru, B., Branca, A.<\/strong>, Faure, N., Gigot, G., Campagne, P., Sezonlin, M., Ndemah, R., Ong\u2019Amo, G., Calatayud, P.-A., & others. (2014). Phylogeography in continuous space: coupling species distribution models and circuit theory to assess the effect of contiguous migration at different climatic periods on genetic differentiation in B usseola fusca (L epidoptera: N octuidae). Molecular Ecology<\/i>, 23<\/i>(9), 2313\u20132325\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Ong\u2019amo, G. O., Le Ru, B. P., Campagne, P., Branca, A.<\/strong>, Calatayud, P.-A., Capdevielle-Dulac, C., & Silvain, J.-F. (2012). Genetic diversity and population structure of Busseola segeta Bowden (Lepidoptera; Noctuidae): A case study of host use diversification in Guineo-Congolian rainforest relic area, Kenya. Insects<\/i>, 3<\/i>(4), 1156\u20131170\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Paape, T., Zhou, P., Branca, A.<\/strong>, Briskine, R., Young, N., & Tiffin, P. (2012). Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome. Genome Biology and Evolution<\/i>, 4<\/i>(5), 726\u2013737\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Epstein, B., Branca, A.<\/strong>, Mudge, J., Bharti, A. K., Briskine, R., Farmer, A. D., Sugawara, M., Young, N. D., Sadowsky, M. J., & Tiffin, P. (2012). Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae<\/i>\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, Gitau, C., & Dupas, S. (2012). Maintenance of Specialized Parasitoid Populations by Polydnaviruses. In Parasitoid Viruses: Symbionts and Pathogens<\/i> (pp. 126\u2013135). Elsevier\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, Paape, T. D., Zhou, P., Briskine, R., Farmer, A. D., Mudge, J., Bharti, A. K., Woodward, J. E., May, G. D., Gentzbittel, L., & others. (2011). Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proceedings of the National Academy of Sciences<\/i>, 108<\/i>(42), E864\u2013E870\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, Le Ru, B. P., Vavre, F., SILVAIN, J.-F., & Dupas, S. (2011). Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection. Molecular Ecology<\/i>, 20<\/i>(5), 959\u2013971\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, Vavre, F., Silvain, J.-F., & Dupas, S. (2009). Maintenance of adaptive differentiation by Wolbachia induced bidirectional cytoplasmic incompatibility: the importance of sib-mating and genetic systems. BMC Evolutionary Biology<\/i>, 9<\/i>, 1\u201313\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Consortium, M. E. R. P. D., Abercrombie, L., Anderson, C., Baldwin, B., Bang, I., Beldade, R., Bernardi, G., Boubou, A., Branca, A.<\/strong>, Bretagnolle, F., & others. (2009). Permanent genetic resources added to molecular ecology resources database 1 January 2009\u201330 April 2009. Molecular Ecology Resources<\/i>, 9<\/i>(5), 1375\u20131379\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong> (2009). Diversification \u00e9cologique du parasito\u00efde africain Cotesia sesamiae: r\u00f4le des partenaires symbiotiques<\/i> [PhD Thesis]. Paris 6\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Dupas, S., Gitau, C. W., Branca, A.<\/strong>, Le R\u00fc, B. P., & Silvain, J.-F. (2008). Evolution of a polydnavirus gene in relation to parasitoid\u2013host species immune resistance. Journal of Heredity<\/i>, 99<\/i>(5), 491\u2013499\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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Branca, A.<\/strong>, & Dupas, S. (2006). A model for the study of Wolbachia pipientis Hertig (Rickettsiales: Rickettsiaceae)-induced cytoplasmic incompatibility in arrhenotokous haplodiploid populations: consequences for biological control. Annales de La Societe Entomologique de France<\/i>, 42<\/i>(3\u20134), 443\u2013448\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\t\t\t\t
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L\u00f3pez-Villavicencio, M., Branca, A.<\/strong>, Giraud, T., & Shykoff, J. A. (2005). Sex-specific effect of Microbotryum violaceum (Uredinales) spores on healthy plants of the gynodioecious Gypsophila repens (Caryophyllaceae). American Journal of Botany<\/i>, 92<\/i>(5), 896\u2013900\\n<\/div>\n<\/div>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t<\/div>\n\n\n","protected":false},"excerpt":{"rendered":"
Maitre de conf\u00e9rences \/ Associate professor   HDR Institut Diversit\u00e9 Ecologie et Evolution du Vivant (IDEEV)Laboratoire Evolution, G\u00e9nomes Comportement, Ecologie CNRS\/Universit\u00e9 Paris-Saclay UMR 9191, IRD UMR 247Bureau 1332,  1er Etage12 route 12891190 Gif sur YvetteFranceTel: +33 (0)1 69 15 49 76 Mail : antoine.branca[at]universite-paris-saclay.fr Complete list of publications : Google Scholar Profile ORCID 0000-0001-8475-1386 Mots-cl\u00e9 \/ Keywords […]<\/p>\n","protected":false},"author":129,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center 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