{"id":1289,"date":"2026-01-26T10:02:09","date_gmt":"2026-01-26T09:02:09","guid":{"rendered":"https:\/\/www.egce.universite-paris-saclay.fr\/?p=1289"},"modified":"2026-01-26T10:02:10","modified_gmt":"2026-01-26T09:02:10","slug":"didier-casane-2","status":"publish","type":"post","link":"https:\/\/www.egce.universite-paris-saclay.fr\/?p=1289&lang=en","title":{"rendered":"Didier Casane"},"content":{"rendered":"

\"casane\"<\/p>\n

Professor at Universit\u00e9 Paris Cit\u00e9<\/h3>\n

Co-team leader of the Evolution and Behavior team<\/a><\/p>\n

Room 1234<\/h3>\n

\"1397745702_aiga_telephone\"<\/a> +33 (0)1 69 15 49 69
\n\"1397745633_aiga_mail\"<\/a> didier.casane[@]gmail.com<\/p>\n

Research<\/h2>\n

Genomics and evolution of sensory systems<\/h3>\n
Evolution of olfaction and taste in vertebrates and insects<\/div>\n
Evolution of sensory systems in cavefishes<\/div>\n

Population genetics, demography and conservation<\/h3>\n
Monitoring of cave populations of Astyanax mexicanus<\/em>.<\/div>\n
As part of a citizen science project, monitoring of snow leopard Panthera uncia<\/em> populations in collaboration with the NGO OSI<\/a><\/strong>.<\/div>\n

<\/h2>\n
 <\/div>\n

Bibliometry and research network<\/h2>\n

see on ResearchGate<\/a> and Scholar Google<\/a><\/h3>\n
 <\/div>\n

<\/h2>\n

Publications<\/h2>\n

\"iconePdf\"<\/a> 78 – <\/strong>Legendre L., Rode J., Germon I., Pavie M., P\u00e8re S., Fumey J., Policarpo M., Espinasa L., Casane D. and R\u00e9taux S. (2026)<\/strong> Long-term genetic mark and recapture in Astyanax mexicanus<\/em> cave populations: demographic inferences and conservation issues. Conservation Genetics<\/em> 27(1):24
\n\"iconePdf\"<\/a> 77 – <\/strong>Brownstein C.D., Policarpo M., Harrington R.C., Hoffman E.A., Stokes M.F., Casane D.<\/strong> and Near T.J. (2025)<\/strong> Convergent Evolution in Amblyopsid Cavefishes and the Age of Eastern North American Subterranean Ecosystems. Molecular Biology and Evolution<\/em> 42(8):msaf185
\n\"iconePdf\"<\/a> 76 – <\/strong> Rode J., Cabanat A.-L., Pelletier A., Kaerle C., Queney G., Chaix B., Vereshagin A. and Casane D.<\/strong> (2024)<\/strong> Monitoring of snow leopards in the Sarychat-Ertash State Reserve (Kyrgyzstan), between 2011 and 2019, through scat genotyping. Snow Leopard Reports<\/em> 3:1
\n\"iconePdf\"<\/a><\/a> 75 – <\/strong> Policarpo M., Legendre L., Germon I., Lafargeas P., Espinasa L., R\u00e9taux S. and Casane D.<\/strong> (2024)<\/strong> The nature and distribution of non-functional alleles suggest only two independent events at the origins of Astyanax mexicanus<\/em> cavefish populations. BMC Ecology and Evolution<\/em> 24(1):41
\n\"iconePdf\"<\/a><\/a> 74 – <\/strong> Policarpo M., Baldwin M., Casane D.<\/strong> and Salzburger W. (2024)<\/strong> Diversity and evolution of the vertebrate chemoreceptor gene repertoire. Nature communications<\/em> 15:1421
\n\"iconePdf\"<\/a> 73 – <\/strong> Rodr\u00edguez-Machado S., Ponce de Le\u00f3n J.L., Germon I., Casane D.<\/strong> and Garc\u00eda-Machado E. (2023)<\/strong> Phylogeography of Limia vittata<\/em> (Cyprinodontiformes: Poeciliidae): geographical distribution of mitochondrial haplotypes is comparable to other Cuban poeciliids. Biological Journal of the Linnean Society<\/em> 140(3): 459-470
\n\"iconePdf\"<\/a> 72 – <\/strong> Hyacinthe C., Attia J., Schutz E., Lego L., Casane D.<\/strong> and R\u00e9taux S. (2023)<\/strong> Acoustic signatures in Mexican cavefish populations inhabiting different caves. PLoS ONE<\/em> 18(8):e0289574
\n\"iconePdf\"<\/a> 71 – <\/strong>Legendre L., Rode J., Germon I., Pavie M., Quiviger C., Policarpo M., Leclercq J., Pere S., Fumey J., Hyacinthe C., Ornelas-Garcia P., Espinasa L., Retaux S. and Casane D.<\/strong> (2023)<\/strong> Genetic identification and reiterated captures suggests that the Astyanax mexicanus<\/em> El Pachon cavefish population is closed and declining. Zoological Research<\/em> 44(4): 701-711
\n\"iconePdf\"<\/a> 70 – <\/strong> Syed A.S., Sharma K., Policarpo M., Ferrando S., Casane D.<\/strong> and Korsching S.I. (2023)<\/strong> Ancient and nonuniform loss of olfactory receptor expression renders the shark nose a de facto vomeronasal organ. Molecular Biology and Evolution<\/em> 40(4):msad076
\n\"iconePdf\"<\/a> 69 – <\/strong> Policarpo M., Bemis K.E., Laurenti P., Legendre L., Sandoz J.C., R\u00e9taux S. and Casane D.<\/strong> (2022)<\/strong> Coevolution of the olfactory organ and its receptor repertoire in ray-finned fishes. BMC Biology<\/em> 20:195
\n\"iconePdf\"<\/a> 68 – <\/strong> Van Helden J., Butler C.D., Achaz G., Canard B., Casane D.<\/strong>, Claverie J.-M., Colombo F., Courtier V., Ebright R.H., Graner F., Leitenberg M., Morand S., Petrovsky N., Segreto R., Decroly E., Halloy J. (2021)<\/strong> An appeal for an objective, open, and transparent scientific debate about the origin of SARS-CoV-2. The Lancet<\/em> 398(10309):1402\u20131404
\n\"iconePdf\"<\/a> 67 – <\/strong> Policarpo M., Bemis K.E., Tyler J.C., Metcalfe C.J., Laurenti P., Sandoz J.C., R\u00e9taux S. and Casane D.<\/strong> (2021)<\/strong> Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape. Molecular Biology and Evolution<\/em> 38(9):3742\u20133753
\n\"iconePdf\"<\/a> 66 – <\/strong> Sallard E., Halloy J., Casane D.<\/strong>, Decroly E., van Helden J. (2021)<\/strong> Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review. Environmental Chemistry Letters<\/em> published online Feb 4:1\u201317
\n\"iconePdf\"<\/a> 65 – <\/strong> Policarpo M., Fumey J., Lafargeas P., Naquin D., Thermes C., Naville M., Dechaud C., Volff J.-N., Cabau C., Klopp C., M\u00f8ller P.R., Bernatchez L., Garc\u00eda-Machado E., R\u00e9taux S. and Casane D. (2021)<\/strong> Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals. Molecular Biology and Evolution<\/em> 38(2):589\u2013605
\n\"iconePdf\"<\/a><\/strong> 64 – <\/strong> Hern\u00e1ndez D., M\u00f8ller P.R., Casane D.<\/strong> and Garc\u00eda-Machado E. (2020)<\/strong> A new species of the cave-fish genus Lucifuga<\/em> (Ophidiiformes, Bythitidae), from eastern Cuba. ZooKeys<\/em> 946:17-35
\n\"iconePdf\"<\/a> 63 – <\/strong> Garc\u00eda-Machado E., Ponce de L\u00e9on J.L., Guti\u00e9rrez-Costa M.A., Michel-Salzat A., Germon I. and Casane D. (2020)<\/strong> Phylogeographic evidence that the distribution of cryptic euryhaline species in the Cuban Gambusia punctata<\/em> species group was shaped by the archipelago geological history. Molecular Phylogenetics and Evolution<\/em> 144:106712
\n\"iconePdf\"<\/a> 62 – <\/strong> Ulmo-D\u00edaz G., Casane D.<\/strong>, Bernatchez L., Gonz\u00e1lez-D\u00edaz P., Apprill A., Castellanos-Gell J., Hern\u00e1ndez-Fern\u00e1ndez L. and Garc\u00eda-Machado E. (2018)<\/strong> Genetic differentiation in the mountainous star coral Orbicella faveolata<\/em> around Cuba. Coral Reefs<\/em> 37(4):1217-1227
\n\"iconePdf\"<\/a> 61 – <\/strong> Fumey J., Hinaux H., Noirot C., Thermes C., R\u00e9taux S. and Casane D.<\/strong> (2018)<\/strong> Evidence of late Pleistocene origin of Astyanax mexicanus<\/em> cavefish. BMC Evolutionary Biology<\/em> 18(1):43
\n\"iconePdf\"<\/a> 60 – <\/strong>Garc\u00eda-Machado E., Ulmo-D\u00edaz G., Castellanos-Gell J. and Casane D.<\/strong> (2018)<\/strong> Patterns of population connectivity in marine organisms around Cuba. Bulletin of Marine Science<\/em> 94(2):193-211
\n\"iconePdf\"<\/a> 59 – <\/strong> Rodr\u00edguez-Machado S., Ponce de Le\u00f3n J.L., Casane D.<\/strong> and Garc\u00eda-Machado E. (2017)<\/strong> Morphology and genetics reveal the occurrence of Girardinus falcatus<\/em> (Eigenmann, 1903) (Cyprinodontiformes, Poeciliidae) in eastern Cuba. Check List<\/em> 13(6):1059-1065
\n\"iconePdf\"<\/a> 58 – <\/strong>Ulmo-D\u00edaz G., Castellanos-Gell J., Ponce de Le\u00f3n J.L., Casane D.<\/strong>, Hurtado A. and Garc\u00eda-Machado E. (2016)<\/strong> Evidence of very low genetic diversity of Cuban gar (Atractosteus tristoechus<\/em>). Revista Investigaciones Marinas<\/em> 36(1):16-23
\n\"iconePdf\"<\/a> 57 – <\/strong>Castellanos-Gell J., Robainas-Barcia A., Pina-Amarg\u00f3s F., Chevalier-Monteagudo P., Metcalfe C., Franco Molina W., Casane D.<\/strong> and Garc\u00eda-Machado E. (2016)<\/strong> Genetic diversity of reef fishes around Cuba: A multi-species assessment. Marine Biology<\/em> 163:165
\n\"iconePdf\"<\/a> 56 – <\/strong>Casane D.<\/strong> and R\u00e9taux S. (2016)<\/strong> Evolutionary genetics of the cavefish Astyanax mexicanus<\/em>. Advances in Genetics<\/em> 95:117-159
\n\"iconePdf\"<\/a> 55 – <\/strong>Hern\u00e1ndez D., Casane D.<\/strong>, Chevalier-Monteagudo P., Bernatchez L. and Garc\u00eda-Machado E. (2016)<\/strong> Go West: A one way stepping-stone dispersion model for the cavefish Lucifuga dentata<\/em> in western Cuba. PLoS ONE<\/em> 11(4):e0153545
\n\"iconePdf\"<\/a> 54 – <\/strong>Shone V., Oulion S., Casane D.<\/strong>, Laurenti P. and Graham A. (2016)<\/strong> Mode of reduction in the number of pharyngeal segments within the sarcopterygians. Zoological Letters<\/em> 2:6
\n\"iconePdf\"<\/a> 53 – <\/strong>Debiais-Thibaud M., Chiori R., Enault S., Oulion S., Germon I., Martinand-Mari C., Casane D.<\/strong> and Borday-Birraux V. (2015)<\/strong> Tooth and scale morphogenesis in shark: an alternative process to the mammalian enamel knot system. BMC Evolutionary Biology<\/em> 15(1):292
\n\"iconePdf\"<\/a> 52 – <\/strong>Naville M., Chalopin D., Casane D.<\/strong>, Laurenti P. and Volff J.-N. (2015)<\/strong> The coelacanth: can a \u201cliving fossil\u201d have active transposable elements in its genome? Mobile Genetic Elements<\/em> 5(4):55-59
\n\"iconePdf\"<\/a> 51 – <\/strong>Hinaux H., Blin M., Fumey J., Legendre L., Heuz\u00e9 A., Casane D.<\/strong> and R\u00e9taux S. (2015)<\/strong> Lens defects in Astyanax mexicanus<\/em> cavefish: evolution of crystallins and a role for alphaA-crystallin. Developmental Neurobiology<\/em> 75(5):505\u2013521
\n\"iconePdf\"<\/a> 50 – <\/strong>Ponce de Le\u00f3n J.L., Le\u00f3n-Final\u00e9 G., Rodr\u00edguez-Silva R., Metcalfe C.J., Hern\u00e1ndez D., Casane D.<\/strong> and Garcia-Machado E. (2014)<\/strong> Phylogeography of Cuban Rivulus: evidence for allopatric speciation and secondary dispersal across a marine barrier. Molecular Phylogenetics and Evolution<\/em> 79:404-414
\n\"iconePdf\"<\/a> 49 – <\/strong>Metcalfe C.J. and Casane D.<\/strong> (2014)<\/strong> Modular organization and reticulate evolution of the ORF1 of Jockey superfamily transposable elements. Mobile DNA<\/em> 5:19
\n\"iconePdf\"<\/a> 48 – <\/strong>R\u00e9taux S. and Casane D.<\/strong> (2013)<\/strong> Evolution of development in the darkness of caves: Adaptation, drift or both? EvoDevo<\/em> 4(1):26
\n\"iconePdf\"<\/a>47 – <\/strong>Debiais-Thibaud M., Metcalfe C.J., Pollack J., Germon I., Ekker M., Depew M., Laurenti P., Borday-Birraux V. and Casane D.<\/strong> (2013)<\/strong> Heterogeneous conservation of Dlx paralog co-expression in jawed vertebrates. PLoS ONE<\/em> 8(6):e68182
\n\"iconePdf\"<\/a>46 – <\/strong>Pradel A., Didier D., Casane D.<\/strong>, Tafforeau P. and Maisey J.G. (2013)<\/strong> Holocephalan embryo provides new information on the evolution of the glossopharyngeal nerve, metotic fissure and parachordal plate in gnathostomes. PLoS ONE<\/em> 8(6):e66988
\n\"iconePdf\"<\/a>45 <\/strong>– Metcalfe C.J. and Casane D.<\/strong> (2013)<\/strong> Accommodating the load: The transposable element content of very large genomes. Mobile Genetic Elements<\/em> 3(2):e24775
\n\"iconePdf\"<\/a>44 \u2013 <\/strong>Compagnucci C., Debiais-Thibaud M., Coolen M., Fish J., Griffin J., Bertocchini F. Minoux M., Rijli F.M., Borday-Birraux V., Casane D.<\/strong>, Mazan S. and Depew M.J. (2013)<\/strong> Pattern and Polarity in the Development and Evolution of the Gnathostome Jaw: Both Conservation and Heterotopy in the Branchial Arches of the Shark, Scyliorhinus canicula<\/em>. Developmental Biology<\/em> 377(2):428-448
\n\"iconePdf\"<\/a>43 – <\/strong>Da Lage J.-L., Binder M., Hua-Van A., Jane\u010dek \u0160. and Casane D.<\/strong> (2013)<\/strong> Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial \u03b1-amylase gene to Basidiomycetes. BMC Evolutionary Biology<\/em> 13:40
\n\"iconePdf\"<\/a>42 – Casane D.<\/strong> and Laurenti P. (2013)<\/strong> Why coelacanths are not \u00ab living fossils \u00bb. BioEssays<\/em> 35(4):332-338
\n\"iconePdf\"<\/a>41 – <\/strong>Hinaux H., Poulain J., Da Silva C., Noirot C., Jeffery W.R., Casane D.<\/strong> and R\u00e9taux S. (2013)<\/strong> De novo<\/em> sequencing of Astyanax mexicanus<\/em> surface fish and Pach\u00f3n cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. PLoS ONE<\/em> 8(1):e53553
\n\"iconePdf\"<\/a>40 <\/strong>– Metcalfe C.J., Fil\u00e9e J., Germon I., Joss J.M.P. and Casane D.<\/strong> (2012)<\/strong> Evolution of the Australian lungfish (Neoceratodus forsteri<\/em>) genome: a major role for CR1 and L2 LINE elements. Molecular Biology and Evolution<\/em> 29(11):3529-3539
\n\"iconePdf\"<\/a>39 <\/strong>– Castellanos-Gell J., Robainas-Barcia A., Casane D.<\/strong>, Chevalier-Monteagudo P., Pina-Amarg\u00f3s F. and Garc\u00eda-Machado E. (2012)<\/strong> The surgeonfish, Acanthurus bahianus<\/em>, has crossed the Amazon \u2013 Orinoco outflow barrier. Marine Biology<\/em> 159(7):1561-1565
\n\"iconePdf\"<\/a>38 – <\/strong>Griffiths A.M., Jacoby D.M.P., Casane D.<\/strong>, McHugh M., Genner M.J. and Sims D.W. (2012)<\/strong> First analysis of multiple paternity in an oviparous shark species, the small-spotted catshark (Scyliorhinus canicula<\/em> L.). Journal of Heredity<\/em> 103(2):166-173
\n\"iconePdf\"<\/a>37 – <\/strong>Debiais-Thibaud M., Oulion S., Bourrat F., Laurenti P., Casane D.<\/strong> and Borday-Birraux V. (2011)<\/strong> The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula<\/em>. BMC Evolutionary Biology<\/em> 11(1):307
\n\"iconePdf\"<\/a>36 – <\/strong>Griffiths A.M., Casane D.<\/strong>, McHugh M., Wearmouth V.J., Sims D.W. and Genner M.J. (2011)<\/strong> Characterisation of polymorphic microsatellite loci in the small-spotted catshark (Scyliorhinus canicula<\/em> L.). Conservation Genetics Resources<\/em> 3(4):705-709
\n\"iconePdf\"<\/a>35<\/strong> – Garc\u00eda-Machado E., Hern\u00e1ndez D., Garc\u00eda-Debr\u00e1s A., Chevalier-Monteagudo P., Metcalfe C.J., Bernatchez L. and Casane D.<\/strong> (2011)<\/strong> Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: Evidence for cryptic allopatric diversity. Molecular Phylogenetics and Evolution <\/em>61(2):470-483
\n\"iconePdf\"<\/a>34 – <\/strong>Oulion S., Borday-Birraux V., Debiais-Thibaud M., Mazan S., Laurenti P. and Casane D.<\/strong> (2011)<\/strong> Evolution of repeated structures along the body axis of jawed vertebrates, insights from the Scyliorhinus canicula<\/em> Hox code. Evolution and Development<\/em> 13(3):247-259
\n\"iconePdf\"<\/a>33 – <\/strong>Kano S., Xiao J.-H., Os\u00f3rio J., Ekker M., Hadzhiev Y., M\u00fcller F., Casane D.<\/strong>, Magdelenat G. and R\u00e9taux S. (2010)<\/strong> Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs. PLoS ONE<\/em> 5(10):e13332
\n\"iconePdf\"<\/a>32 – <\/strong>Oulion S., Debiais-Thibaud M., d\u2019Aubenton-Carafa Y., Thermes C., Da Silva C., Bernard-Samain S., Gavory F., Wincker P., Mazan S. and Casane D.<\/strong> (2010)<\/strong> Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula<\/em>) transcriptome. Molecular Biology and Evolution<\/em> 27(12):2829-2838
\n\"iconePdf\"<\/a>31 \u2013 <\/strong>Lara A., Ponce de Le\u00f3n J.L., Rodr\u00edguez R., Casane D.<\/strong>, C\u00f4t\u00e9 G., Bernatchez L. and Garc\u00eda-Machado E. (2010)<\/strong> DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts. Molecular Ecology resources<\/em> 10(3):421-430
\n\"iconePdf\"<\/a>30 <\/strong>– Moreno P., Alvarez M., Lopez L., Moratorio G., Casane D.<\/strong>, Castells M., Castro S., Cristina J. and Colina R. (2009)<\/strong> Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient. Virology Journal<\/em> 6:203
\n\"iconePdf\"<\/a>29 – <\/strong>Bon C., Caudy N., de Dieuleveult M., Fosse P., Philippe M., Maksud F., Beraud-Colomb E., Bouzaid E., Kefi R., Laugier C., Rousseau B., Casane D.<\/strong>, van der Plicht J. and Elalouf J.M. (2008)<\/strong> Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet. Proceedings of the National Academy of Science USA <\/em>105(45):17447-17452
\n\"iconePdf\"<\/a>28 – <\/strong>Debiais-Thibaud M., Germon I., Laurenti P., Casane D.<\/strong> and Borday-Birraux V. (2008)<\/strong> Low divergence in Dlx gene expression between dentitions of the medaka (Oryzias latipes<\/em>) versus high level of expression shuffling in osteichtyans. Evolution and Development<\/em> 10(4):464-476
\n\"iconePdf\"<\/a>27 – <\/strong>Jaszczyszyn Y., Haeussler M., Heuz\u00e9 A., Debiais-Thibaud M., Casane D.<\/strong>, Bourrat F., and Joly J.S. (2007)<\/strong> Comparison of the expression of medaka (Oryzias latipes<\/em>) pitx genes with other vertebrates show high conservation and a case of functional shuffling in the pituitary. Gene<\/em> 406(1-2):42-50
\n\"iconePdf\"<\/a>26 – <\/strong>Debiais-Thibaud M., Borday-Birraux V., Germon I., Bourrat F., Metcalfe C.J., Casane D.<\/strong> and Laurenti P. (2007)<\/strong> Development of oral and pharyngeal teeth in the medaka (Oryzias latipes<\/em>): comparison of morphology and expression of eve1 gene. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution <\/em>308(6):693-708
\n\"iconePdf\"<\/a>25 –<\/strong> Da Lage J.-L., Danchin E.G. and Casane D.<\/strong> (2007)<\/strong> Where do animal alpha-amylases come from? An interkingdom trip. FEBS Letters<\/em> 581(21):3927-3935
\n\"iconePdf\"<\/a>24 –<\/strong> Moreno M.P., Casane D.<\/strong>, L\u00f3pez L. and Cristina J. (2006)<\/strong> Evidence of recombination in quasispecies populations of an Hepatitis C Virus patient undergoing anti-viral therapy. Virology Journal <\/em>3(1):87
\n\"iconePdf\"<\/a>23 –<\/strong> Deyts C., Casane D.<\/strong>, Vernier P., Bourrat F. and Joly J.S. (2006)<\/strong> Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs. European Journal of Neuroscience<\/em> 24(8):2299-2308
\n\"iconePdf\"<\/a>22 –<\/strong> Snell E.A., Brooke N.M., Taylor W.R., Casane D.<\/strong>, Philippe H. and Holland P.W. (2006)<\/strong> An unusual choanoflagellate protein released by Hedgehog autocatalytic processing. Proceedings of the Royal Society of London, Series B<\/em> 273:401-407
\n\"iconePdf\"<\/a>21 –<\/strong> Philippe H., Snell E.A., Bapteste E., Lopez P., Holland P.W. and Casane D. (2004)<\/strong> Phylogenomics of eukaryotes: the impact of missing data on large alignments. Molecular Biology and Evolution<\/em> 21(9):1740-1752
\n\"iconePdf\"<\/a>20 –<\/strong> Colina R., Casane D.<\/strong>, Vasquez S., Garc\u00eda-Aguirre L., Chunga A., Romero H., Khan B. and Cristina J. (2004)<\/strong> Evidence of intratypic recombination in natural populations of hepatitis C virus. Journal of general virology<\/em> 85:31-37
\n\"iconePdf\"<\/a>19 –<\/strong> Gribaldo S., Casane D.<\/strong>, Lopez P. and Philippe H. (2003)<\/strong> Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin. Molecular Biology and Evolution<\/em> 20(11):1754-1759
\n\"iconePdf\"<\/a>18 –<\/strong> Philippe H., Casane D.<\/strong>, Gribaldo S., Lopez P. and Meunier J. (2003)<\/strong> Heterotachy and functional shift in protein evolution. IUBMB Life<\/em> 55(4-5):257-265
\n\"iconePdf\"<\/a>17 –<\/strong> Costa-Mattioli M., Ferr\u00e9 V., Casane D.<\/strong>, Perez-Bercoff R., Coste-Burel M., Imbert-Marcille B.M., Andre E.C., Bressollette-Bodin C., Billaudel S. and Cristina J. (2003)<\/strong> Evidence of recombination in natural populations of hepatitis A virus. Virology<\/em> 311(1):51-59
\n\"iconePdf\"<\/a>16 –<\/strong> Avaron F., Tha\u00ebron-Antono C., Beck C.W., Borday-Birraux V., G\u00e9raudie J., Casane D.<\/strong> and Laurenti P. (2003)<\/strong> Comparison of even-skipped<\/em> related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences. Evolution and Development<\/em> 5(2):145-156
\n\"iconePdf\"<\/a>15 – Casane D.<\/strong> and Gueride M. (2002)<\/strong> Evolution of mitochondrial tandem repeats heteroplasmy in cultured rabbit cells. Current Genetics<\/em> 42(1):66-72
\n\"iconePdf\"<\/a>14 –<\/strong> Lopez P., Casane D.<\/strong> and Philippe H. (2002)<\/strong> Heterotachy, an important process of protein evolution. Molecular Biology and Evolution<\/em> 19(1):1-7
\n\"iconePdf\"<\/a>13 – <\/strong>Costa-Mattioli M., Cristina J., Romero H., Perez-Bercof R., Casane D.<\/strong>, Colina R., Garcia L., Vega I., Glikman G., Romanosky V., Nicand E., Gassin M., Billaudel S. and Ferre V. (2002)<\/strong> Molecular evolution of hepatitis A virus: a new classification based on the complete VP1 protein. Journal of virology<\/em> 76(18):9516-9525
\n\"iconePdf\"<\/a>12 – <\/strong>Delgado S., Casane D.<\/strong>, Bonnaud L., Laurin M., Sire J.-Y. and Girondot M. (2001)<\/strong> Molecular evidence for Precambrian origin of amelogenin, the major protein of Vertebrate enamel. Molecular Biology and Evolution<\/em> 18(12):2146-2153
\n\"iconePdf\"<\/a>11 – <\/strong>Borday V., Thaeron C., Avaron F., Brulfert A., Casane D.<\/strong>, Laurenti P. and Geraudie J. (2001)<\/strong> evx1<\/em> transcription in bony fin rays segment boundaries leads to a reiterated pattern during zebrafish fin development and regeneration. Developmental Dynamics<\/em> 220(2):91-98
\n\"iconePdf\"<\/a>10 – <\/strong>Dufour C., Casane D.<\/strong>, Denton D., Wickings J., Corvol P. and Jeunemaitre X. (2000)<\/strong> Human-Chimpanzee DNA sequence variation in the four major genes of the renin angiotensin system. Genomics<\/em> 69:14-26
\n\"iconePdf\"<\/a>9 – <\/strong>Thaeron C., Avaron F., Casane D.<\/strong>, Borday V., Thisse B., Thisse C., Boulekbache H. and Laurenti P. (2000)<\/strong> Zebrafish evx1 is dynamically expressed during embryogenesis in subsets of interneurones, posterior gut and urogenital system. Mechanisms of Development<\/em> 99:167-172
\n\"iconePdf\"<\/a>8 – Casane D.<\/strong>, Boissinot S., Chang B.H.-J., Shimmin L. and Li W.H. (1997)<\/strong> Mutation Pattern Variation among regions of the primate genome. Journal of Molecular Evolution<\/em> 45:216-226
\n\"iconePdf\"<\/a>7 – Casane D.<\/strong>, Dennebouy N., De Rochambeau H., Mounolou J.-C. and Monnerot M. (1997)<\/strong> Non-neutral evolution of tandem repeats in the mitochondrial DNA control region of logomorphs. Molecular Biology and Evolution<\/em> 14(8):779-789
\n\"iconePdf\"<\/a>6 – <\/strong>Hardy C., Callou C., Vigne J.-D., Casane D.<\/strong>, Dennebouy N., Mounolou J.-C. and Monnerot M. (1995)<\/strong> Rabbit mitochondrial DNA diversity from prehistoric to modern times. Journal of Molecular Evolution<\/em> 40:227-237
\n\"iconePdf\"<\/a>5 – <\/strong>Monnerot M., Vigne J.-D., Biju-Duval C., Casane D.<\/strong>, Callou C., Hardy C., Mougel F., Soriguer R., Dennebouy N. and Mounolou J.-C. (1994)<\/strong> Rabbit and Man: Genetic and Historic approach. Genetics Selection and Evolution<\/em> 26(1):167-182
\n\"iconePdf\"<\/a>4 – Casane D.<\/strong>, Dennebouy N., De Rochambeau H., Mounolou J.-C. and Monnerot M. (1994)<\/strong> Genetic analysis of systematic mitochondrial heteroplasmy in rabbits. Genetics<\/em> 138:471-480
\n\"iconePdf\"<\/a>3 – <\/strong>Monnerot M., Casane D.<\/strong>, Hardy C. and Vigne J.-D. (1994)<\/strong> Evolution of Oryctolagus: relationships within the Lagomorpha system and access to populations with ancient DNA. Polish Ecological Studies<\/em> 20(3-4):543-551
\n\"iconePdf\"<\/a>2 – <\/strong>Hardy C., Casane D.<\/strong>, Vigne J.-D., Callou C., Dennebouy N., Mounolou J.-C. and Monnerot M. (1994)<\/strong> Ancient DNA from Bronze Age bones of European rabbit (Oryctolagus cuniculus<\/em>). Experientia<\/em> 50:254-270
\n\"iconePdf\"<\/a>1 – <\/strong>Hardy C., Vigne J.-D., Casane D.<\/strong>, Dennebouy N., Mounolou J.-C. and Monnerot M. (1994)<\/strong> Origin of European rabbit (Oryctolagus cuniculus<\/em>) in a Mediterranean Island: Zooarchaeology and ancient DNA examination. Journal of Evolutionary Biology<\/em> 7:217-226<\/p>\n

\n

Book chapters<\/h2>\n

\"iconePdf\"<\/a>4 – <\/strong>Ulmo-D\u0131\u0301az G., Castellanos Gell J., Casane D.<\/strong>, Sturm A., Voss J. and Garc\u0131\u0301a-Machado E. (2023)<\/strong> Population Genetics of Cuba\u2019s Scleractinian Corals. In: Coral Reefs of World, Vol. 18, Vassil N. Zlatarski et al. (Eds): Coral Reefs of Cuba.
\n\"iconePdf\"<\/a>3 – <\/strong>Casane D.<\/strong>, Saclier N., Policarpo M., Fran\u00e7ois C. and Lef\u00e9bure T. (2023)<\/strong> Evolutionary genomics and transcriptomics in groundwater animals. In: Groundwater Ecology and Evolution, Second Edition, Academic Press, 393-412.
\n\"iconePdf\"<\/a>2 – <\/strong>Malard F., Garcia Machado E., Casane D.<\/strong>, Cooper S., Fiser C. and Eme D. (2023)<\/strong> Dispersal and geographic range size in groundwater. In: Groundwater Ecology and Evolution, Second Edition, Academic Press, 185-207.
\n\"iconePdf\"<\/a>1 – <\/strong>Casane D. <\/strong>and Gu\u00e9ride M. (1999)<\/strong> Mitochondrial DNA inheritance in mammals. In: Mitochondrial Diseases: Models and Methods, Springer-Verlag, 17-31.<\/p>\n<\/div>\n

Popular science<\/h2>\n
\n\"iconePdf\"<\/a>11 – <\/strong>Casane D.<\/strong>, Baldwin M.W., Salzburger W. and Policarpo M. (2025)<\/strong> Chiliombes dans les g\u00e9nomes : le cas des chimior\u00e9cepteurs des t\u00e9trapodes aquatiques. M\u00e9decine\/Sciences<\/em> 41(1):47-52
\n\"iconePdf\"<\/a>10 – <\/strong>Casane D.<\/strong> (2024)<\/strong> Que contient votre g\u00e9nome ? M\u00e9decine\/Sciences<\/em> 40(6-7):560-561
\n\"iconePdf\"<\/a>9 – <\/strong>Sallard E., Halloy J., Casane D.<\/strong>, van Helden J. and Decroly E. (2020)<\/strong> Retrouver les origines du SARS-COV-2 dans les phylog\u00e9nies de coronavirus. M\u00e9decine\/Sciences<\/em> 36(8-9):783-796
\n\"iconePdf\"<\/a>8 – <\/strong>Casane D.<\/strong>, Policarpo M. and Laurenti P. (2019)<\/strong> Pourquoi le taux de mutation n\u2019est-il jamais \u00e9gal \u00e0 z\u00e9ro ? M\u00e9decine\/Sciences<\/em> 35(3):245-251
\n\"iconePdf\"<\/a>7 – <\/strong>Casane D.<\/strong> and Laurenti P. (2016)<\/strong> Le cas CRISPR, mutations \u00ab ready-made \u00bb et \u00e9volution lamarckienne d\u2019un syst\u00e8me immunitaire adaptatif. M\u00e9decine\/Sciences<\/em> 32(6-7):640-645
\n\"iconePdf\"<\/a>6 – <\/strong>Casane D.<\/strong>, Fumey J. and Laurenti P. (2015)<\/strong> L\u2019apoph\u00e9nie d\u2019ENCODE ou Pangloss examine le g\u00e9nome humain. M\u00e9decine\/Sciences<\/em> 31(6-7):680-686
\n\"iconePdf\"<\/a>5 – <\/strong>Casane D.<\/strong> and Laurenti P. (2014)<\/strong> Syllogomanie mol\u00e9culaire : l\u2019ADN non codant enrichit le jeu des possibles. M\u00e9decine\/Sciences<\/em> 30(12):1177-1183
\n\"iconePdf\"<\/a>4 – <\/strong>Casane D.<\/strong> and Laurenti P. (2014)<\/strong> Une toute nouvelle t\u00eate pour l\u2019anc\u00eatre des vert\u00e9br\u00e9s \u00e0 m\u00e2choires. M\u00e9decine\/Sciences<\/em> 30(1):38-40
\n\"iconePdf\"<\/a>3 – <\/strong>Casane D.<\/strong> and Laurenti P. (2012)<\/strong> Penser la biologie dans un cadre phylog\u00e9n\u00e9tique : l’exemple de l’\u00e9volution des vert\u00e9br\u00e9s. M\u00e9decine\/Sciences<\/em> 28(12):1121-1127
\n\"iconePdf\"<\/a>2 – <\/strong>Oulion S., Laurenti P. and Casane D.<\/strong> (2012)<\/strong> Organisation des g\u00e8nes Hox : l\u2019\u00e9tude de vert\u00e9br\u00e9s non-mod\u00e8les m\u00e8ne \u00e0 un nouveau paradigme. M\u00e9decine\/Sciences<\/em> 28(4):10-13
\n\"iconePdf\"<\/a>1 – <\/strong>Lopez P., Casane D.<\/strong> and Philippe H. (2002)<\/strong> Phylog\u00e9nie et \u00e9volution mol\u00e9culaires. M\u00e9decine\/Sciences<\/em> 18:767-774<\/div>\n","protected":false},"excerpt":{"rendered":"

Professor at Universit\u00e9 Paris Cit\u00e9 Co-team leader of the Evolution and Behavior team Room 1234 +33 (0)1 69 15 49 69 didier.casane[@]gmail.com Research Genomics and evolution of sensory systems Evolution of olfaction and taste in vertebrates and insects Evolution of sensory systems in cavefishes Population genetics, demography and conservation Monitoring of cave populations of Astyanax […]<\/p>\n","protected":false},"author":22,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center 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