{"id":4014,"date":"2014-11-14T16:51:31","date_gmt":"2014-11-14T15:51:31","guid":{"rendered":"https:\/\/www.egce.universite-paris-saclay.fr\/?page_id=4014"},"modified":"2014-11-14T16:51:31","modified_gmt":"2014-11-14T15:51:31","slug":"polyploidy-architecture-and-complexity-of-genomes","status":"publish","type":"page","link":"https:\/\/www.egce.universite-paris-saclay.fr\/?page_id=4014&lang=en","title":{"rendered":"Polyploidy, architecture and complexity of genomes"},"content":{"rendered":"<h2 style=\"text-align: center;\">Themes<\/h2>\n<p style=\"text-align: justify;\">Genome evolution follows numerous ways in parallel. For example, when a host and\u00a0 its microbiome are considered it is the hologenome (the genome constituted of the host and the microbial community) that will adapt and evolve. How it does it, is one of our research interest. Moreover, genomes can reach a large size. We will investigate how the genome structure react to polyploidisation and how the elements which are involved in the dynamic structure of these genomes are regulated.<\/p>\n<p style=\"text-align: justify;\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-4681 aligncenter\" src=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/test2-300x174.jpg\" alt=\"test2\" width=\"262\" height=\"152\" srcset=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/test2-300x174.jpg 300w, https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/test2-768x446.jpg 768w, https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/test2.jpg 986w\" sizes=\"auto, (max-width: 262px) 100vw, 262px\" \/>The scientific question that we tackle is the comparative and evolutive study of the complexity of genome structure in the amphibians. In particular we focus on 3 main themes:<\/p>\n<ol>\n<li>The metagenomes as a\u00a0 genome community of species living in tight interaction (commensalism, symbiosis, parasitism&#8230;).<\/li>\n<li>Genomes of extreme size and the enigma of the C value (polyploidisation, re-diploidisation, B-chromosome, repeated DNA&#8230;).<\/li>\n<li>The dynamic of genome (B chromosome, mosaicisation inside an individual, horizontal transfer, polymorphisms, germinal-somatic\u00a0 rearrangements ).<\/li>\n<\/ol>\n<p>What are the life histories determining the complexity of genomes? New and big data are now available, thanks to massive parallel sequencing technologies. Biologists can produce relevant data sets starting from relevant biological models.<\/p>\n<div id=\"attachment_6992\" class=\"wp-caption aligncenter\" style=\"width: 261px;\">\n<p><a href=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/IMG_4387.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-6992 \" src=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/IMG_4387-300x225.jpg\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" srcset=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/IMG_4387-300x225.jpg 300w, https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/IMG_4387-768x576.jpg 768w, https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/09\/IMG_4387-1024x768.jpg 1024w\" alt=\"Xenopus parafraseri (Photo \u00a9 N. Pollet,CNRS)\" width=\"261\" height=\"196\" \/><\/a><em>Xenopus parafraseri<\/em><\/p>\n<p>&nbsp;<\/p>\n<\/div>\n<h4 style=\"text-align: justify;\">Team members<a href=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/11\/polygnome_team.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-6986 alignright\" src=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/11\/polygnome_team-300x72.jpg\" alt=\"polygnome_team\" width=\"300\" height=\"72\" srcset=\"https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/11\/polygnome_team-300x72.jpg 300w, https:\/\/www.egce.universite-paris-saclay.fr\/wp-content\/uploads\/2014\/11\/polygnome_team.jpg 385w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/h4>\n<ul>\n<li><a title=\"Nicolas Pollet\" href=\"https:\/\/www.egce.universite-paris-saclay.fr\/?p=4561\">Nicolas Pollet<\/a>, CNRS researcher.<\/li>\n<li><a href=\"https:\/\/www.egce.universite-paris-saclay.fr\/?p=9071\">Jonathan Fil\u00e9e<\/a>, CNRS researcher.<\/li>\n<li><a title=\"Jean-Michel, Rossignol\" href=\"https:\/\/www.egce.universite-paris-saclay.fr\/?p=3475\">Jean-Michel Rossignol<\/a>, Emeritus Professor, University Paris-Sud.<\/li>\n<li><a href=\"https:\/\/www.egce.universite-paris-saclay.fr\/?p=1289\">Isabelle Clavereau<\/a>, CNRS Technician.<\/li>\n<li><a title=\"Jean-Bernard, Emond\" href=\"https:\/\/www.egce.universite-paris-saclay.fr\/?p=890\">Jean-Bernard Emond<\/a>, CNRS Engineer.<\/li>\n<\/ul>\n<p><strong>Alumni<\/strong><\/p>\n<ul>\n<li>Thibault Scalvenzi, PhD student, GAO University of&rsquo;Evry-Val d&rsquo;Essonne. Now at <a href=\"https:\/\/research.pasteur.fr\/en\/member\/thibault-scalvenzi\/\">Pasteur Institute<\/a><\/li>\n<\/ul>\n<h3><\/h3>\n","protected":false},"excerpt":{"rendered":"<p>Themes Genome evolution follows numerous ways in parallel. For example, when a host and\u00a0 its microbiome are considered it is the hologenome (the genome constituted of the host and the microbial community) that will adapt and evolve. How it does it, is one of our research interest. Moreover, genomes can reach a large size. We [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":4003,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-4014","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/pages\/4014","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4014"}],"version-history":[{"count":0,"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/pages\/4014\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=\/wp\/v2\/pages\/4003"}],"wp:attachment":[{"href":"https:\/\/www.egce.universite-paris-saclay.fr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4014"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}